Resource
| Id | ATAC-seq/ENCSR231BZU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR231BZU [biosample_summary="Homo sapiens GM19351"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN805VMY|/analyses/ENCAN805VMY/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF342KIA|/files/ENCFF342KIA/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.824486. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF342KIA|/files/ENCFF342KIA/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.83. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR231BZU | float |
ATAC-seq_ENCSR231BZU |
ATAC-seq ENCSR231BZU [biosample_summary="Homo sapiens GM19351"]
|
 |
[1.41, 45.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 63589904 | 1.98% | 126883 |
| chr1 | 5558143 | 2.23% | 10966 |
| chr2 | 5746812 | 2.37% | 11627 |
| chr3 | 4694724 | 2.37% | 9542 |
| chr4 | 3987305 | 2.10% | 8269 |
| chr5 | 4053004 | 2.23% | 8222 |
| chr6 | 4389885 | 2.57% | 8834 |
| chr7 | 3736688 | 2.35% | 7484 |
| chr8 | 3404661 | 2.35% | 6916 |
| chr9 | 2493984 | 1.80% | 4925 |
| chr10 | 3096945 | 2.31% | 6134 |
| chr11 | 3023688 | 2.24% | 6015 |
| chr12 | 3161219 | 2.37% | 6260 |
| chr13 | 1798434 | 1.57% | 3688 |
| chr14 | 1819078 | 1.70% | 3543 |
| chr15 | 1602099 | 1.57% | 3145 |
| chr16 | 1608051 | 1.78% | 3029 |
| chr17 | 1722557 | 2.07% | 3248 |
| chr18 | 1519809 | 1.89% | 3167 |
| chr19 | 1290409 | 2.20% | 2242 |
| chr20 | 1309409 | 2.03% | 2597 |
| chr21 | 562429 | 1.20% | 1089 |
| chr22 | 610674 | 1.20% | 1132 |
| chrX | 2399034 | 1.54% | 4806 |
| chrY | 863 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 126883 | 150 | 3052 | 501.17 | 412 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF568ADF.bed.gz | 4.83 MB | 265cbc4feca24de1781ffa1813f3269c |
| ENCFF568ADF.tabix.bed.gz | 1.39 MB | 533bfd12bab00e6050d2abd89f03bf15 |
| ENCFF568ADF.tabix.bed.gz.tbi | 504.68 KB | f061b9ae4c4e5ef5bcf6fa43fdc6c942 |
| genomic_resource.yaml | 2.49 KB | ae92fef0799d6c5c8a3a1ac6f31ead62 |
| statistics/ |