Resource
| Id | ATAC-seq/ENCSR227FVE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR227FVE [biosample_summary="Homo sapiens ovary tissue female adult (59 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN981KIO|/analyses/ENCAN981KIO/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN981KIO|/analyses/ENCAN981KIO/} has in progress subobject document {916f3765-8ecb-4cc9-9d3d-26c6ff4427cb|/documents/916f3765-8ecb-4cc9-9d3d-26c6ff4427cb/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF615QSS|/files/ENCFF615QSS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.866052. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF615QSS|/files/ENCFF615QSS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR227FVE | float |
ATAC-seq_ENCSR227FVE |
ATAC-seq ENCSR227FVE [biosample_summary="Homo sapiens ovary tissue female adult (59 years)"]
|
 |
[1.23, 30.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 87104378 | 2.71% | 127372 |
| chr1 | 8264900 | 3.32% | 11955 |
| chr2 | 6860407 | 2.83% | 10187 |
| chr3 | 5560758 | 2.80% | 8436 |
| chr4 | 3678540 | 1.93% | 5685 |
| chr5 | 4354118 | 2.40% | 6550 |
| chr6 | 4984162 | 2.92% | 7456 |
| chr7 | 4464491 | 2.80% | 6635 |
| chr8 | 3665829 | 2.53% | 5495 |
| chr9 | 3870622 | 2.80% | 5756 |
| chr10 | 4500882 | 3.36% | 6582 |
| chr11 | 4399480 | 3.26% | 6215 |
| chr12 | 4260666 | 3.20% | 6182 |
| chr13 | 1858589 | 1.63% | 2884 |
| chr14 | 2783173 | 2.60% | 4079 |
| chr15 | 3033010 | 2.97% | 4441 |
| chr16 | 3096355 | 3.43% | 4267 |
| chr17 | 4117676 | 4.95% | 5602 |
| chr18 | 1825275 | 2.27% | 2821 |
| chr19 | 3318754 | 5.66% | 4296 |
| chr20 | 2387930 | 3.71% | 3491 |
| chr21 | 1199576 | 2.57% | 1725 |
| chr22 | 2068146 | 4.07% | 2902 |
| chrX | 2549788 | 1.63% | 3725 |
| chrY | 1251 | <0.01% | 5 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 127372 | 150 | 3986 | 683.86 | 531 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF497SGQ.bed.gz | 6.12 MB | 2252ecbd4ca19d522caa12690cc605f7 |
| ENCFF497SGQ.tabix.bed.gz | 1.42 MB | b17859400b642e867160da5ec06db499 |
| ENCFF497SGQ.tabix.bed.gz.tbi | 417.24 KB | d97913ae8fb4c50fbd1d5642da0a5c88 |
| genomic_resource.yaml | 2.77 KB | 8e7ee0a5a6b35eb98c6657dab783c67b |
| statistics/ |