Resource

Id ATAC-seq/ENCSR225FZHcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR225FZH [biosample_summary="Homo sapiens heart left ventricle tissue male adult (55 years)"]
Description
Labels
  • accession: ENCSR225FZH
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002084/
  • biosample_summary: Homo sapiens heart left ventricle tissue male adult (55 years)
  • date_created: 2019-07-30T07:23:02.344175+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR225FZH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (55 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR225FZH float

ATAC-seq_ENCSR225FZH
ATAC-seq ENCSR225FZH [biosample_summary="Homo sapiens heart left ventricle tissue male adult (55 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR225FZH [1.4, 36.7]
n
50,540,378
mean
5.6
sd
3.03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 505403781.57% 100608
chr1 4944396 1.99% 9690
chr2 3988325 1.65% 8163
chr3 3266323 1.65% 6611
chr4 2143002 1.13% 4430
chr5 2698402 1.49% 5535
chr6 2828585 1.66% 5735
chr7 2528320 1.59% 5162
chr8 2174234 1.50% 4443
chr9 2135194 1.54% 4240
chr10 2522978 1.89% 5128
chr11 2656023 1.97% 5172
chr12 2430013 1.82% 4705
chr13 1246734 1.09% 2591
chr14 1525263 1.42% 3027
chr15 1808004 1.77% 3574
chr16 1856364 2.05% 3582
chr17 2441191 2.93% 4608
chr18 1080563 1.34% 2314
chr19 2027154 3.46% 3541
chr20 1374097 2.13% 2796
chr21 639869 1.37% 1284
chr22 1183033 2.33% 2310
chrX 994827 0.64% 1865
chrY 47484 0.08% 102
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 100608 150 2719 502.35 418
global segment-length histogram

Files

Filename Size md5
ENCFF915AJN.bed.gz 3.66 MB 6e4dfe0290fe4afaa48d51166a1341e6
ENCFF915AJN.tabix.bed.gz 1.1 MB 5cb01ee100766d7192865f11522d36e2
ENCFF915AJN.tabix.bed.gz.tbi 424.02 KB d1b0301c209429ffca996de7d9e5709b
genomic_resource.yaml 2.71 KB 2d28dfdb3da035ba83cf8a5a5d94452e
statistics/