Resource

Id ATAC-seq/ENCSR222SCAcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR222SCA [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours"]
Description
Labels
  • accession: ENCSR222SCA
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours
  • date_created: 2017-01-18T01:35:09.123750+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR222SCA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 100 ng/mL lipopolysaccharide for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR222SCA float

ATAC-seq_ENCSR222SCA
ATAC-seq ENCSR222SCA [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR222SCA [1.48, 25.8]
n
36,337,249
mean
5.98
sd
3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 363372491.13% 92655
chr1 3304464 1.33% 8305
chr2 3001847 1.24% 7825
chr3 2440474 1.23% 6360
chr4 1849073 0.97% 4899
chr5 2019953 1.11% 5308
chr6 2215628 1.30% 5672
chr7 1997754 1.25% 5121
chr8 1759968 1.21% 4618
chr9 1487067 1.07% 3769
chr10 1727526 1.29% 4479
chr11 1792930 1.33% 4549
chr12 1800420 1.35% 4581
chr13 884436 0.77% 2339
chr14 1138625 1.06% 2863
chr15 1077963 1.06% 2795
chr16 1173430 1.30% 2843
chr17 1458677 1.75% 3498
chr18 841090 1.05% 2239
chr19 1323221 2.26% 2861
chr20 943248 1.46% 2401
chr21 465932 1.00% 1163
chr22 566437 1.11% 1364
chrX 1064437 0.68% 2792
chrY 2649 <0.01% 11
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 92655 150 2621 392.18 331
global segment-length histogram

Files

Filename Size md5
ENCFF412RKE.bed.gz 2.78 MB 5cf9f4cdf9df90632d1c63844f170078
ENCFF412RKE.tabix.bed.gz 1014.18 KB 9078cf02d9c09138370d7af52652fd9f
ENCFF412RKE.tabix.bed.gz.tbi 421.07 KB 329b88519c7ad01efe1c352799bf155d
genomic_resource.yaml 1.58 KB 107084364da61c0b76e0a785d3d35e47
statistics/