Resource
| Id | ATAC-seq/ENCSR220ASC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR220ASC [biosample_summary="Homo sapiens A549"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2, Rep 3 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN510JWR|/analyses/ENCAN510JWR/} has in progress subobject document {6f35eb75-b4bc-4ebe-8a18-1bb18c42df6e|/documents/6f35eb75-b4bc-4ebe-8a18-1bb18c42df6e/} audit_internal_action: Released analysis {ENCAN510JWR|/analyses/ENCAN510JWR/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR220ASC | float |
ATAC-seq_ENCSR220ASC |
ATAC-seq ENCSR220ASC [biosample_summary="Homo sapiens A549"]
|
![]() |
[1.36, 36.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 62030094 | 1.93% | 110923 |
| chr1 | 5558719 | 2.23% | 9688 |
| chr2 | 5280908 | 2.18% | 9862 |
| chr3 | 3370710 | 1.70% | 6155 |
| chr4 | 2041468 | 1.07% | 3703 |
| chr5 | 3271986 | 1.80% | 6060 |
| chr6 | 2837010 | 1.66% | 4936 |
| chr7 | 3500259 | 2.20% | 6478 |
| chr8 | 2830744 | 1.95% | 5231 |
| chr9 | 2816334 | 2.04% | 5086 |
| chr10 | 3038056 | 2.27% | 5464 |
| chr11 | 3051586 | 2.26% | 5245 |
| chr12 | 3203696 | 2.40% | 5709 |
| chr13 | 981635 | 0.86% | 1768 |
| chr14 | 1961929 | 1.83% | 3506 |
| chr15 | 2468247 | 2.42% | 4515 |
| chr16 | 2448044 | 2.71% | 4261 |
| chr17 | 3941675 | 4.73% | 6768 |
| chr18 | 888004 | 1.10% | 1649 |
| chr19 | 3101758 | 5.29% | 5161 |
| chr20 | 1920536 | 2.98% | 3580 |
| chr21 | 570144 | 1.22% | 989 |
| chr22 | 1225117 | 2.41% | 2145 |
| chrX | 1647449 | 1.06% | 2816 |
| chrY | 74080 | 0.13% | 148 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 110923 | 150 | 3647 | 559.22 | 425 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF735UWS.bed.gz | 4.77 MB | d808e8bac1f26d964878129f4f4f1705 |
| ENCFF735UWS.tabix.bed.gz | 1.21 MB | 8dea978863d463893c2447234007bd71 |
| ENCFF735UWS.tabix.bed.gz.tbi | 443.41 KB | 4054e6d6610aaae31e1a5a67df3e2815 |
| genomic_resource.yaml | 1.5 KB | 73624ca9af88714d4c18036feee106fb |
| statistics/ |
