Resource

Id ATAC-seq/ENCSR213DBUcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR213DBU [biosample_summary="Homo sapiens posterior vena cava tissue male adult (26 years)"]
Description
Labels
  • accession: ENCSR213DBU
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001072/
  • biosample_summary: Homo sapiens posterior vena cava tissue male adult (26 years)
  • date_created: 2019-05-29T05:49:13.092461+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR213DBU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (26 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR213DBU float

ATAC-seq_ENCSR213DBU
ATAC-seq ENCSR213DBU [biosample_summary="Homo sapiens posterior vena cava tissue male adult (26 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR213DBU [1.33, 29.5]
n
67,185,076
mean
4.95
sd
2.77

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 671850762.09% 133977
chr1 6373169 2.56% 12527
chr2 5335202 2.20% 10758
chr3 4329028 2.18% 8811
chr4 2805727 1.48% 5851
chr5 3588374 1.98% 7326
chr6 3749510 2.20% 7519
chr7 3428939 2.15% 7010
chr8 2955837 2.04% 6027
chr9 3089864 2.23% 6208
chr10 3486910 2.61% 7086
chr11 3457845 2.56% 6765
chr12 3291565 2.47% 6546
chr13 1663581 1.45% 3407
chr14 2180910 2.04% 4387
chr15 2368244 2.32% 4620
chr16 2392457 2.65% 4557
chr17 3138849 3.77% 5990
chr18 1436368 1.79% 3008
chr19 2441262 4.16% 4349
chr20 1925632 2.99% 3851
chr21 957016 2.05% 1887
chr22 1449459 2.85% 2823
chrX 1276640 0.82% 2531
chrY 62688 0.11% 133
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 133977 150 2737 501.47 417
global segment-length histogram

Files

Filename Size md5
ENCFF986AVU.bed.gz 4.71 MB 01ba9f8b729ebe6830c340357c7ab3e2
ENCFF986AVU.tabix.bed.gz 1.46 MB c238408a3eac9a29ee23bdd2dbdabdb6
ENCFF986AVU.tabix.bed.gz.tbi 471.29 KB 3e279c1e2a116f63cf181974b99f4116
genomic_resource.yaml 3.35 KB 5d5e5613e12ee53426d93152d3a76390
statistics/