Resource

Id ATAC-seq/ENCSR210NKBcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR210NKB [biosample_summary="Homo sapiens testis tissue male adult (37 years)"]
Description
Labels
  • accession: ENCSR210NKB
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000473/
  • biosample_summary: Homo sapiens testis tissue male adult (37 years)
  • date_created: 2017-01-28T02:58:37.806382+00:00
  • date_released: 2017-06-21
  • doi: 10.17989/ENCSR210NKB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR210NKB float

ATAC-seq_ENCSR210NKB
ATAC-seq ENCSR210NKB [biosample_summary="Homo sapiens testis tissue male adult (37 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR210NKB [1.69, 26.8]
n
21,236,475
mean
4.32
sd
1.53

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 212364750.66% 41166
chr1 1994738 0.80% 3727
chr2 1629116 0.67% 3097
chr3 1412113 0.71% 2802
chr4 1167762 0.61% 2328
chr5 1194935 0.66% 2391
chr6 1274542 0.75% 2523
chr7 1149026 0.72% 2213
chr8 984670 0.68% 1955
chr9 930111 0.67% 1794
chr10 945225 0.71% 1846
chr11 1114411 0.82% 2189
chr12 1056022 0.79% 2020
chr13 549692 0.48% 1081
chr14 747204 0.70% 1413
chr15 639262 0.63% 1205
chr16 688172 0.76% 1292
chr17 855417 1.03% 1653
chr18 474258 0.59% 964
chr19 851632 1.45% 1556
chr20 477030 0.74% 960
chr21 287485 0.62% 569
chr22 388864 0.77% 782
chrX 405641 0.26% 765
chrY 19147 0.03% 41
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 41166 150 2751 515.87 430
global segment-length histogram

Files

Filename Size md5
ENCFF526OFQ.bed.gz 1.5 MB 636acd716ee1d81915e8bd3604d37f16
ENCFF526OFQ.tabix.bed.gz 464.88 KB f668ad9777982468e5d7d1328d502bae
ENCFF526OFQ.tabix.bed.gz.tbi 269.99 KB efc9534e2e3372d7a52d49493baa6d9f
genomic_resource.yaml 1.6 KB 530003c6aee7b5a3959fb672d20264ea
statistics/