Resource
| Id | ATAC-seq/ENCSR204SMO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR204SMO [biosample_summary="Homo sapiens heart right ventricle tissue male adult (46 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (46 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN684KTO|/analyses/ENCAN684KTO/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN684KTO|/analyses/ENCAN684KTO/} has in progress subobject document {6acd2938-bc75-4608-9fea-e0c2dcad0a86|/documents/6acd2938-bc75-4608-9fea-e0c2dcad0a86/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF836NAJ|/files/ENCFF836NAJ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.862324. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF836NAJ|/files/ENCFF836NAJ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.90. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR204SMO | float |
ATAC-seq_ENCSR204SMO |
ATAC-seq ENCSR204SMO [biosample_summary="Homo sapiens heart right ventricle tissue male adult (46 years)"]
|
 |
[1.41, 37.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 54553019 | 1.70% | 113400 |
| chr1 | 5240197 | 2.10% | 10735 |
| chr2 | 4303255 | 1.78% | 9103 |
| chr3 | 3418623 | 1.72% | 7284 |
| chr4 | 2233823 | 1.17% | 4827 |
| chr5 | 2903567 | 1.60% | 6222 |
| chr6 | 3105070 | 1.82% | 6599 |
| chr7 | 2703670 | 1.70% | 5713 |
| chr8 | 2402663 | 1.66% | 5153 |
| chr9 | 2402036 | 1.74% | 4959 |
| chr10 | 2769327 | 2.07% | 5863 |
| chr11 | 2879526 | 2.13% | 5867 |
| chr12 | 2653629 | 1.99% | 5490 |
| chr13 | 1293694 | 1.13% | 2801 |
| chr14 | 1696118 | 1.58% | 3492 |
| chr15 | 1911562 | 1.87% | 3961 |
| chr16 | 1989991 | 2.20% | 3973 |
| chr17 | 2656170 | 3.19% | 5210 |
| chr18 | 1118114 | 1.39% | 2488 |
| chr19 | 2135077 | 3.64% | 3924 |
| chr20 | 1536506 | 2.38% | 3220 |
| chr21 | 722823 | 1.55% | 1532 |
| chr22 | 1228844 | 2.42% | 2467 |
| chrX | 1196359 | 0.77% | 2396 |
| chrY | 52375 | 0.09% | 121 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 113400 | 150 | 2775 | 481.07 | 383 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF344CDB.bed.gz | 3.96 MB | 0d1c84081209e2d8b6de15b9bf2b9edf |
| ENCFF344CDB.tabix.bed.gz | 1.22 MB | 8c68bbff4b925014926eb4ae26a63049 |
| ENCFF344CDB.tabix.bed.gz.tbi | 449.75 KB | 1ad8caf91e46179464724a21be7ab812 |
| genomic_resource.yaml | 2.8 KB | 10a09218370618b79d0e749db17ab7b3 |
| statistics/ |