Resource

Id ATAC-seq/ENCSR204FCVcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR204FCV [biosample_summary="Homo sapiens dendritic cell treated with lipopolysaccharide"]
Description
Labels
  • accession: ENCSR204FCV
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with lipopolysaccharide
  • date_created: 2016-10-12T01:54:10.778406+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR204FCV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with lipopolysaccharide
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR204FCV float

ATAC-seq_ENCSR204FCV
ATAC-seq ENCSR204FCV [biosample_summary="Homo sapiens dendritic cell treated with lipopolysaccharide"]
 HISTOGRAM FOR ATAC-seq_ENCSR204FCV [1.59, 38.1]
n
47,480,695
mean
8.98
sd
4.58

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 474806951.48% 114803
chr1 4368085 1.75% 10524
chr2 4010566 1.66% 9776
chr3 3204996 1.62% 7788
chr4 2267239 1.19% 5546
chr5 2599240 1.43% 6350
chr6 2921736 1.71% 7111
chr7 2526166 1.59% 6096
chr8 2316417 1.60% 5696
chr9 1958306 1.42% 4775
chr10 2328038 1.74% 5728
chr11 2331164 1.73% 5637
chr12 2369271 1.78% 5818
chr13 1155597 1.01% 2802
chr14 1491496 1.39% 3588
chr15 1447328 1.42% 3537
chr16 1562524 1.73% 3609
chr17 1963635 2.36% 4649
chr18 1061088 1.32% 2599
chr19 1611470 2.75% 3508
chr20 1234858 1.92% 3012
chr21 583716 1.25% 1393
chr22 756355 1.49% 1792
chrX 1410565 0.90% 3466
chrY 839 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 114803 150 2175 413.58 348
global segment-length histogram

Files

Filename Size md5
ENCFF388PAR.bed.gz 3.62 MB bbdd1eb444eca3bc17288493181127b1
ENCFF388PAR.tabix.bed.gz 1.23 MB b57c6c419e24bbbe2b004b948806a05a
ENCFF388PAR.tabix.bed.gz.tbi 443.22 KB aabf07a632fc4fd31c1f92da976563a9
genomic_resource.yaml 1.46 KB 2a8ee4a66c711b4e673740dd3a8898df
statistics/