Resource
| Id | ATAC-seq/ENCSR180HEL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR180HEL [biosample_summary="Homo sapiens HG02678"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN984CYS|/analyses/ENCAN984CYS/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF447ZRG|/files/ENCFF447ZRG/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.793776. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF447ZRG|/files/ENCFF447ZRG/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.83. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR180HEL | float |
ATAC-seq_ENCSR180HEL |
ATAC-seq ENCSR180HEL [biosample_summary="Homo sapiens HG02678"]
|
 |
[1.39, 41.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 56218475 | 1.75% | 103247 |
| chr1 | 5003586 | 2.01% | 9036 |
| chr2 | 4963683 | 2.05% | 9344 |
| chr3 | 3970095 | 2.00% | 7523 |
| chr4 | 3313668 | 1.74% | 6306 |
| chr5 | 3471181 | 1.91% | 6526 |
| chr6 | 3869773 | 2.27% | 7164 |
| chr7 | 3140888 | 1.97% | 5857 |
| chr8 | 2831919 | 1.95% | 5316 |
| chr9 | 2168168 | 1.57% | 3933 |
| chr10 | 2747188 | 2.05% | 5065 |
| chr11 | 2678579 | 1.98% | 4868 |
| chr12 | 2770467 | 2.08% | 5055 |
| chr13 | 1608428 | 1.41% | 3031 |
| chr14 | 1698518 | 1.59% | 3089 |
| chr15 | 1577954 | 1.55% | 2855 |
| chr16 | 1532892 | 1.70% | 2632 |
| chr17 | 1847544 | 2.22% | 3170 |
| chr18 | 1294497 | 1.61% | 2439 |
| chr19 | 1472709 | 2.51% | 2308 |
| chr20 | 1155339 | 1.79% | 2125 |
| chr21 | 554864 | 1.19% | 982 |
| chr22 | 713469 | 1.40% | 1192 |
| chrX | 1704730 | 1.09% | 3161 |
| chrY | 128336 | 0.22% | 270 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 103247 | 150 | 2888 | 544.5 | 454 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF872XXD.bed.gz | 3.99 MB | 16dc0c7706490bef9042cede2ccc3361 |
| ENCFF872XXD.tabix.bed.gz | 1.13 MB | cdb5e8a76a13124cea08b3336f53d21d |
| ENCFF872XXD.tabix.bed.gz.tbi | 446.17 KB | 444c46587054ecac700231ac29b690d3 |
| genomic_resource.yaml | 2.49 KB | 7e3fc32a428fa0a0c131e547c0feb9ed |
| statistics/ |