Resource

Id ATAC-seq/ENCSR174MLDcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR174MLD [biosample_summary="Homo sapiens bile duct tissue female adult (41 years)"]
Description
Labels
  • accession: ENCSR174MLD
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002394/
  • biosample_summary: Homo sapiens bile duct tissue female adult (41 years)
  • date_created: 2019-05-25T04:54:34.334952+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR174MLD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (41 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR174MLD float

ATAC-seq_ENCSR174MLD
ATAC-seq ENCSR174MLD [biosample_summary="Homo sapiens bile duct tissue female adult (41 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR174MLD [1.4, 25.5]
n
49,837,056
mean
3.71
sd
1.63

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 498370561.55% 92218
chr1 4777563 1.92% 8669
chr2 4037236 1.67% 7750
chr3 3048373 1.54% 5844
chr4 2449780 1.29% 4801
chr5 2604378 1.43% 5022
chr6 2897207 1.70% 5426
chr7 2660415 1.67% 4991
chr8 2303666 1.59% 4436
chr9 2176602 1.57% 4032
chr10 2264791 1.69% 4265
chr11 2730848 2.02% 4999
chr12 2259546 1.70% 4138
chr13 1215067 1.06% 2343
chr14 1559477 1.46% 2827
chr15 1520800 1.49% 2741
chr16 1740622 1.93% 3062
chr17 2313507 2.78% 3949
chr18 1117221 1.39% 2180
chr19 2012404 3.43% 3283
chr20 1253156 1.94% 2316
chr21 678251 1.45% 1232
chr22 1045711 2.06% 1889
chrX 1169531 0.75% 2019
chrY 904 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 92218 150 3811 540.43 425
global segment-length histogram

Files

Filename Size md5
ENCFF970CDR.bed.gz 3.56 MB c5da99066c0203ed70957298321a2d5e
ENCFF970CDR.tabix.bed.gz 1.01 MB 65d0e6d8aa12124779ec10067b306652
ENCFF970CDR.tabix.bed.gz.tbi 418.1 KB 08b9f00fd4021306d3c949882f02bbce
genomic_resource.yaml 2.18 KB b5df2fdfbcb50e8133aadad61ba3848a
statistics/