Resource
| Id | ATAC-seq/ENCSR144ZXR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR144ZXR [biosample_summary="Homo sapiens HG02759"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN823UEA|/analyses/ENCAN823UEA/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF687QML|/files/ENCFF687QML/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.758255. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF687QML|/files/ENCFF687QML/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.79. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR144ZXR | float |
ATAC-seq_ENCSR144ZXR |
ATAC-seq ENCSR144ZXR [biosample_summary="Homo sapiens HG02759"]
|
 |
[1.4, 46.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 64439330 | 2.00% | 115719 |
| chr1 | 5579584 | 2.24% | 9834 |
| chr2 | 5734723 | 2.37% | 10554 |
| chr3 | 4591894 | 2.32% | 8508 |
| chr4 | 3907891 | 2.05% | 7317 |
| chr5 | 4066337 | 2.24% | 7490 |
| chr6 | 4433216 | 2.60% | 8030 |
| chr7 | 3626794 | 2.28% | 6607 |
| chr8 | 3265473 | 2.25% | 6004 |
| chr9 | 2499265 | 1.81% | 4480 |
| chr10 | 3108596 | 2.32% | 5595 |
| chr11 | 3051432 | 2.26% | 5419 |
| chr12 | 3091720 | 2.32% | 5478 |
| chr13 | 1867961 | 1.63% | 3419 |
| chr14 | 1993915 | 1.86% | 3546 |
| chr15 | 1771851 | 1.74% | 3168 |
| chr16 | 1732419 | 1.92% | 2904 |
| chr17 | 2035516 | 2.44% | 3348 |
| chr18 | 1537834 | 1.91% | 2823 |
| chr19 | 1622675 | 2.77% | 2453 |
| chr20 | 1381805 | 2.14% | 2487 |
| chr21 | 659363 | 1.41% | 1146 |
| chr22 | 780858 | 1.54% | 1289 |
| chrX | 1937903 | 1.24% | 3497 |
| chrY | 160305 | 0.28% | 323 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 115719 | 150 | 2944 | 556.86 | 464 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF553NML.bed.gz | 4.44 MB | 7bc6a42fb8c91f51ca2ea6811878ccfd |
| ENCFF553NML.tabix.bed.gz | 1.25 MB | 7c9afd5c7042129cce8f151b10effd2f |
| ENCFF553NML.tabix.bed.gz.tbi | 489.25 KB | 5d7e4cfd202bff39d81d554a522bd531 |
| genomic_resource.yaml | 2.49 KB | eea4a7af430ba5d55aa76226e03ecd8a |
| statistics/ |