Resource

Id ATAC-seq/ENCSR131CHJcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR131CHJ [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours"]
Description
Labels
  • accession: ENCSR131CHJ
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours
  • date_created: 2016-10-12T01:54:11.301558+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR131CHJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 100 ng/mL lipopolysaccharide for 2 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR131CHJ float

ATAC-seq_ENCSR131CHJ
ATAC-seq ENCSR131CHJ [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 2 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR131CHJ [1.53, 33.6]
n
45,288,659
mean
8
sd
4.06

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 452886591.41% 109721
chr1 4241614 1.70% 10172
chr2 3714810 1.53% 9168
chr3 2974097 1.50% 7247
chr4 2087541 1.10% 5118
chr5 2424740 1.34% 5990
chr6 2734989 1.60% 6656
chr7 2415919 1.52% 5856
chr8 2176839 1.50% 5368
chr9 1893459 1.37% 4620
chr10 2183991 1.63% 5395
chr11 2250581 1.67% 5481
chr12 2248482 1.69% 5461
chr13 1054066 0.92% 2576
chr14 1432594 1.34% 3445
chr15 1424810 1.40% 3512
chr16 1522818 1.69% 3522
chr17 1989085 2.39% 4674
chr18 985926 1.23% 2423
chr19 1659649 2.83% 3653
chr20 1206196 1.87% 2958
chr21 580215 1.24% 1389
chr22 773742 1.52% 1820
chrX 1310929 0.84% 3211
chrY 1567 <0.01% 6
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 109721 150 2702 412.76 345
global segment-length histogram

Files

Filename Size md5
ENCFF827NNA.bed.gz 3.47 MB d5eeb66014b5b4596b29d7ef6c09f866
ENCFF827NNA.tabix.bed.gz 1.18 MB 7f27b077e9646540edebab3e563f8b93
ENCFF827NNA.tabix.bed.gz.tbi 438.36 KB dbd4e38f49dcb6948f69c87253f35089
genomic_resource.yaml 1.58 KB b2608667d72a20cbfa361a6127cd3ce9
statistics/