Resource
| Id | ATAC-seq/ENCSR102RXG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR102RXG [biosample_summary="Homo sapiens T-cell female adult (33 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (33 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN662KJC|/analyses/ENCAN662KJC/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF476TCF|/files/ENCFF476TCF/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.878535. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF476TCF|/files/ENCFF476TCF/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR102RXG | float |
ATAC-seq_ENCSR102RXG |
ATAC-seq ENCSR102RXG [biosample_summary="Homo sapiens T-cell female adult (33 years)"]
|
 |
[1.25, 44.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 38926960 | 1.21% | 64225 |
| chr1 | 3959492 | 1.59% | 6492 |
| chr2 | 2931204 | 1.21% | 4970 |
| chr3 | 2177692 | 1.10% | 3662 |
| chr4 | 1357417 | 0.71% | 2241 |
| chr5 | 1795895 | 0.99% | 3022 |
| chr6 | 2294792 | 1.34% | 3810 |
| chr7 | 1910219 | 1.20% | 3199 |
| chr8 | 1458825 | 1.01% | 2474 |
| chr9 | 1527388 | 1.10% | 2497 |
| chr10 | 1796344 | 1.34% | 3066 |
| chr11 | 1986903 | 1.47% | 3215 |
| chr12 | 1949261 | 1.46% | 3193 |
| chr13 | 878678 | 0.77% | 1480 |
| chr14 | 1384201 | 1.29% | 2336 |
| chr15 | 1332268 | 1.31% | 2247 |
| chr16 | 1528649 | 1.69% | 2427 |
| chr17 | 2225069 | 2.67% | 3540 |
| chr18 | 643073 | 0.80% | 1100 |
| chr19 | 2031545 | 3.47% | 3138 |
| chr20 | 1048204 | 1.63% | 1723 |
| chr21 | 526027 | 1.13% | 855 |
| chr22 | 949372 | 1.87% | 1528 |
| chrX | 1233762 | 0.79% | 2007 |
| chrY | 680 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 64225 | 150 | 3001 | 606.1 | 501 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF058UYY.bed.gz | 2.79 MB | 7d1ef1542038ca339bfb950339d4ad4b |
| ENCFF058UYY.tabix.bed.gz | 734.0 KB | c007e011a7cde9ebe4ff634b1d4aac15 |
| ENCFF058UYY.tabix.bed.gz.tbi | 293.73 KB | 06c6072f0411a165829df067bb97cac4 |
| genomic_resource.yaml | 2.54 KB | 397907f86297b3776d894a30030ef497 |
| statistics/ |