Resource
| Id | ATAC-seq/ENCSR072UYN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR072UYN [biosample_summary="Homo sapiens sciatic nerve tissue female child (16 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female child (16 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN770HXE|/analyses/ENCAN770HXE/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN770HXE|/analyses/ENCAN770HXE/} has in progress subobject document {99907ca1-e9fc-4ddd-a628-0c3a70bcaa6d|/documents/99907ca1-e9fc-4ddd-a628-0c3a70bcaa6d/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF996DYK|/files/ENCFF996DYK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.870725. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF996DYK|/files/ENCFF996DYK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR072UYN | float |
ATAC-seq_ENCSR072UYN |
ATAC-seq ENCSR072UYN [biosample_summary="Homo sapiens sciatic nerve tissue female child (16 years)"]
|
 |
[1.27, 30.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 89598762 | 2.78% | 141979 |
| chr1 | 8284381 | 3.33% | 12821 |
| chr2 | 7269915 | 3.00% | 11768 |
| chr3 | 5745422 | 2.90% | 9406 |
| chr4 | 3881298 | 2.04% | 6551 |
| chr5 | 4783599 | 2.64% | 7894 |
| chr6 | 5263463 | 3.08% | 8593 |
| chr7 | 4616076 | 2.90% | 7500 |
| chr8 | 4017436 | 2.77% | 6572 |
| chr9 | 3984077 | 2.88% | 6237 |
| chr10 | 4626796 | 3.46% | 7388 |
| chr11 | 4536422 | 3.36% | 6913 |
| chr12 | 4381195 | 3.29% | 6960 |
| chr13 | 2308597 | 2.02% | 3825 |
| chr14 | 2849318 | 2.66% | 4498 |
| chr15 | 3026378 | 2.97% | 4714 |
| chr16 | 3051075 | 3.38% | 4569 |
| chr17 | 4112777 | 4.94% | 6045 |
| chr18 | 1908058 | 2.37% | 3220 |
| chr19 | 3033143 | 5.17% | 4162 |
| chr20 | 2451156 | 3.80% | 3871 |
| chr21 | 1310479 | 2.81% | 2067 |
| chr22 | 1922710 | 3.78% | 2882 |
| chrX | 2233694 | 1.43% | 3517 |
| chrY | 1297 | <0.01% | 6 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 141979 | 150 | 3262 | 631.07 | 506 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF436AWP.bed.gz | 5.74 MB | 6b30a2179db915923b18bb314b1cd50a |
| ENCFF436AWP.tabix.bed.gz | 1.56 MB | 4d97b1df181e597417f0d57fad3089ad |
| ENCFF436AWP.tabix.bed.gz.tbi | 478.1 KB | 9fb8d3bd57364a6f8f146489a56d0481 |
| genomic_resource.yaml | 2.79 KB | 94fc629e7806c7c8981394e728e58da7 |
| statistics/ |