Resource

Id ATAC-seq/ENCSR059IHAcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR059IHA [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 30 minutes"]
Description
Labels
  • accession: ENCSR059IHA
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 30 minutes
  • date_created: 2017-01-18T01:58:52.064178+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR059IHA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 100 ng/mL lipopolysaccharide for 30 minutes
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR059IHA float

ATAC-seq_ENCSR059IHA
ATAC-seq ENCSR059IHA [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 30 minutes"]
 HISTOGRAM FOR ATAC-seq_ENCSR059IHA [1.38, 32.5]
n
53,580,678
mean
7.41
sd
4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 535806781.67% 125864
chr1 4878475 1.96% 11391
chr2 4462014 1.84% 10710
chr3 3551735 1.79% 8446
chr4 2610812 1.37% 6233
chr5 2907946 1.60% 6974
chr6 3281308 1.92% 7773
chr7 2874074 1.80% 6705
chr8 2582003 1.78% 6168
chr9 2228231 1.61% 5291
chr10 2626468 1.96% 6283
chr11 2607931 1.93% 6141
chr12 2657589 1.99% 6285
chr13 1310121 1.15% 3154
chr14 1698286 1.59% 3950
chr15 1655812 1.62% 3951
chr16 1732188 1.92% 3864
chr17 2237110 2.69% 4986
chr18 1215291 1.51% 2911
chr19 1877230 3.20% 3907
chr20 1409471 2.19% 3339
chr21 674250 1.44% 1547
chr22 885489 1.74% 2009
chrX 1614649 1.03% 3838
chrY 2195 <0.01% 8
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 125864 150 2633 425.7 351
global segment-length histogram

Files

Filename Size md5
ENCFF958KJD.bed.gz 4.11 MB 5859a4754f0b55eec7bbdf7c52b65de9
ENCFF958KJD.tabix.bed.gz 1.35 MB 5744ef38e0f6d744d40fd628d9c6cd00
ENCFF958KJD.tabix.bed.gz.tbi 481.75 KB 2ddcf63ef6e27d1ce3428082ec351666
genomic_resource.yaml 1.59 KB a137755b02ead50edbba9ab29d3b6477
statistics/