Resource

Id ATAC-seq/ENCSR040DJKcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR040DJK [biosample_summary="Homo sapiens psoas muscle tissue female adult (59 years)"]
Description
Labels
  • accession: ENCSR040DJK
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008450/
  • biosample_summary: Homo sapiens psoas muscle tissue female adult (59 years)
  • date_created: 2019-06-02T05:58:32.428926+00:00
  • date_released: 2020-08-17
  • doi: 10.17989/ENCSR040DJK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (59 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR040DJK float

ATAC-seq_ENCSR040DJK
ATAC-seq ENCSR040DJK [biosample_summary="Homo sapiens psoas muscle tissue female adult (59 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR040DJK [1.24, 32.8]
n
54,425,611
mean
5.5
sd
2.91

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 544256111.69% 98166
chr1 5503637 2.21% 9808
chr2 4364063 1.80% 8069
chr3 3418547 1.72% 6387
chr4 2031763 1.07% 3881
chr5 2690662 1.48% 5037
chr6 3025283 1.77% 5606
chr7 2733874 1.72% 5034
chr8 2142103 1.48% 3984
chr9 2354748 1.70% 4272
chr10 2664151 1.99% 4990
chr11 2839422 2.10% 5016
chr12 2538496 1.90% 4518
chr13 1129889 0.99% 2108
chr14 1739575 1.63% 3125
chr15 2021839 1.98% 3673
chr16 2119743 2.35% 3584
chr17 2908014 3.49% 4859
chr18 1018834 1.27% 2002
chr19 2237959 3.82% 3490
chr20 1508336 2.34% 2732
chr21 723269 1.55% 1285
chr22 1402466 2.76% 2367
chrX 1308698 0.84% 2338
chrY 240 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 98166 150 3613 554.42 445
global segment-length histogram

Files

Filename Size md5
ENCFF782EGV.bed.gz 3.93 MB 3b50b504f52235381671808ad779333b
ENCFF782EGV.tabix.bed.gz 1.08 MB bef2a22e3c3cd20b631e4e696eb40bb1
ENCFF782EGV.tabix.bed.gz.tbi 383.81 KB 5b2ffefc89d93ff985cf61d1f2350b7a
genomic_resource.yaml 1.63 KB 6c9ae738651d98222f5774447df3d1bf
statistics/